ChemMine Tools is an online workbench for analyzing and modeling drug-like small molecule data. Its recently added drug-target interaction module provides utilities for identifying drug-target interactions for sets of small molecule or gene/protein identifiers.

signatureSearch is a software that integrates a suite of algorithms into an analysis environment for gene expression signature searching combined with functional enrichment analysis and visualization methods to facilitate the downstream interpretation of the results.

ChemmineR is a cheminformatics package for analyzing drug-like small molecule data in R.

The Drug-Target Search module in ChemMine Tools allows users to identify drug-target interactions for sets of small molecule or gene/protein identifiers. The underlying annotations are largely obtained from the ChEMBL database.